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The 4 most requested features in the electronic lab notebook eCAT

Posted by Rory on December 6th, 2010 @ 9:14 am

Usually I write about what’s in eCAT and what you can do with eCAT.  Today I’m going to highlight things that are not — yet — in eCAT.  Here are the four most requested features.

Export to PDF

More convenient export of records is important for a couple of reasons.  First, you may want to save a copy of a record, or multiple records, in a form that is easy to reproduce and/or show to others.  Second, easier export of records provides a feeling of security that you can always get your data out of eCAT.

PDF import

Scientists make extensive use of PDFs, so it’s not surprising that the ability to import PDFs into eCAT is a frequently requested feature.

Import as a database

eCAT’s ability to import spreadsheets as spreadsheets is very popular.  But it would also be useful lto be able to import data from a spreadsheet in tabular form, i.e. using a CSV importer.

Image annotation

A large percentage of researchers in biology and medicine make extensive use of images in their research.  The ability to annotate those images is essential to them, so they need this feature in an electronic lab notebook.

A short post this time but hopefully a useful one.  Thanks for the feedback!  All four of these features will be in the spring 2011 release.

How to import images from the dashboard and as a child record in an electronic lab notebook

Posted by Rory on October 18th, 2010 @ 10:18 am

Last week I looked at how to insert images into a record in the electronic lab notebook  eCAT.  This week I’ll look at two other ways of importing images into eCAT, from the dashboard and from the record page.

Importing images from the dashboard

To start, just click on the Import menu item and then on Image

You will be taken to the import page, which looks like this:

The import page

You can choose to import images from your local computer by uploading them to the server, or you can import from an attachment store that your administrator has defined for you.

Importing from your local computer

To import from a local file, click “Choose File” or “Browse” (the exact text depends on your browser) and then select the file you want to upload. eCAT supports a variety of image types. The standard common images types are all fully supported – JPEG, BMP, PNG, GIF etc. We also support a range of specific scientific types such as TIFF, Zeiss LSM, Zeiss ZVI, Delatvision, Biorad (.pic) and Metamorph (.stk).

Importing from the local computer

If you wish to remove a file you have selected for upload, then click the red cross beside the file name.

Importing from an attachment store

To import from an attachment store, click the “Import files from attachment stores” button. Then click in a text box that says “Click here to select an attachment”. The following screen will appear.Importing from an attachment store

Select a file to import from the attachment store, and then click “Insert” to add it to list of files to import. You can import more than one file from attachment stores at once by clicking the [+] button to the right of the text box saying “Click here to select an attachment”.

When you have image files selected from either the local computer or an attachment store, click “Import” to import the files. Some image types support a preview and allow selection of the size of thumbnail images you will see in your imported records. If the image type you are importing works this way then you will see a screen similar to the following:

Previewing an imported image

When you have finished selecting the image sizes, click “Save” to save your settings. You will be taken to the target record if you are importing more than one image, or to the record that you have imported if you have imported a single image.

Importing images as children of a record

When you are viewing a record, you can click the “Import” option in the Children section of the main menu on the left hand side.

This will import the image as a child record of the record currently being viewed.

Getting started with the electronic lab notebook eCAT — it’s easy!

Posted by Rory on August 5th, 2010 @ 7:00 am

What’s the best way to get started with eCAT?

The two simplest things to do are (a) import some of your existing data, and (b) create new data in eCAT.  You can do both of these from eCAT’s dashboard, which looks like this:

To import existing data —  a word document, a spreadsheet, or an image — click ‘Import’ and choose what you would like to import, say a word document.  You will be given the option of browsing documents  stored on your computer, so just choose the document you want to select, and then click ‘import’.  The document you have selected is created in your personal space.  To view it simply click on the record with the name of the document and the document will appear, with the correct formatting, just as in the original word document.  You can then continue editing the document in eCAT.

Importing existing data is also covered in the following video

Importing documents, spreadsheets and images

Another way to get started is to create new data in eCAT.  That’s just as easy as importing data!  Again you start at the dashboard, and this time click ‘Create New’.  You will be given a list of types of record that come pre-loaded in eCAT, such as experiment, project, antibody, etc.  Just choose one — for example freezer — and a blank version of the record will appear

You can now begin to edit the record!

For more ideas on how to get started with eCAT, please take a look at the Getting started with eCAT video.